Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1262 ATGTCACATTCCGGGAAACCCGTTTCGTCGGAGTTAGGTCTCAGCGAGCGGTTCCGCGACTCGGTGAGTTGCTCCGCCGACGACAGCAGCAACAACGACGACACCAACAAGCCTGATTTCCGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGGCCGCGTCACCACCACGGCAGTGCACCGGCGAGCACCACCAGCACCAGCACCAGCAGCGGCTCCACCGGCTCGGGTTCGGCTCGAAACGTCAACACCGGAACTGTTCCGAAGAGATCCGATTCCGGCGAGCTGTCTGGGTCGAGCGAGACGAATAGCCCGACCCGCGTCACGAAGCCGGGTCGCCGAAGATCCGATTCGGGTCATAGCCAGAGATCTCCGTCGTCGTCTTCGTCCCCGGCCGCCGTGAATTCGCCGCCGCCGAGCCTTCCGGCCGGGAACATTTGTCCCTCCGGGAGGGTTCTCAAGTCAGCGACGGTGGCTGCGCCAAGCCGGTGCTCAAGGTCGGATGTCCTGGGATCCGGTACAGGGAATTACGGCCATGGGAGCATAATGCGAGGCGGAAGAGGCGGCGGCGATGTGAAGACCGCTGCTGGAGATTCAGTGAAGCGAGGTGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTATAAGAGAGGGCACTTTGGTGAGGCACTGTGTTTGTATGATCGGGCAATTGCGATGTCCCCGGGCAATGCCGCTTACCGGAGCAACCGGGCAGCGGCGCTGACCGGCTTGGGACGGCTGCCTGAGGCCGTGAAGGCCTGTGAGGAGGCTTTGGGGTTGGATCCTAATTATGGCAGGGCGCATCAGCGATTGGCAATGCTGTATCTCAGGTTAGGACTGGTTGAGGATGCTAGGAAGCACTTATGTTATCCTGGGCTGCAGCTGGATCCTGCTGACATGCAGAAGTTGCAAATTGTGGAAAAGCATGTTAACAAATGCAGCGATGTACGGAGGATACGAGATTGGAAAAGTGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCCGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCTTTCTCAAGCTAAACCAGATGGACGATGCTGAGTCGTGTTTATCACAGATTCCCAAAAGCGAGCCGCGACATGGTTCCTTATCACAGCAAATATTTTTCGGGATGTTTTCCGAGGCTTATTGCTACTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTTCAGCTGCTGAGAAAGCTAATCAGATTGATCACCGAAACGTTGAAGTTGCTGTTTTGCACACCAATGTGAGGATGGTGGCTAGAGCTCGACTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACCGAGGCATGCTTGGCATACGAGGAAGGTTTGAGGCTGGACACTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTATGCATCCAACCAAATTACATTAAAGCCATTCTTCGAAGGGCAGCCTCAAATAGCAAGCTGGAAAGGTGGGAAGAAGCAGTAAAAGATTACGAGGTTTTGCGGAGAGAACTACCAAACAACAATGAAGTTGCCGAGAATCTGTTTCATGCGCAAGTCGCATTAAAGAAATCTCGTGGGGAAGAAGTACATAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCTTCAAACTTGCAATGTCAGCAGATATCGCCATTTGTGAATACACTATGTATTCGCTATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGCAAGCCCCACAGTTGCTGCTGCTGAGAATGTTAGGGTTGTGCCAACTTTCAAGATCTACAAAAATGGCAGTCGGGTGAAGGAAATTGTATGTCCTAATCATGATATGTTGGAAAACTCCATTAGGCATTACAGCTTGTAG 2040 0.5123 MSHSGKPVSSELGLSERFRDSVSCSADDSSNNDDTNKPDFRELDLGSPVSTLRPRHHHGSAPASTTSTSTSSGSTGSGSARNVNTGTVPKRSDSGELSGSSETNSPTRVTKPGRRRSDSGHSQRSPSSSSSPAAVNSPPPSLPAGNICPSGRVLKSATVAAPSRCSRSDVLGSGTGNYGHGSIMRGGRGGGDVKTAAGDSVKRGVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVKACEEALGLDPNYGRAHQRLAMLYLRLGLVEDARKHLCYPGLQLDPADMQKLQIVEKHVNKCSDVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEAFLKLNQMDDAESCLSQIPKSEPRHGSLSQQIFFGMFSEAYCYFVRAQIEMAFGRFENAVSAAEKANQIDHRNVEVAVLHTNVRMVARARLRGNDLFKSERFTEACLAYEEGLRLDTSNSVLYCNRAACWFKLGQWERSIEDCNQALCIQPNYIKAILRRAASNSKLERWEEAVKDYEVLRRELPNNNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCQQISPFVNTLCIRYPSINFLKVDIQASPTVAAAENVRVVPTFKIYKNGSRVKEIVCPNHDMLENSIRHYSL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1262 679 MobiDBLite consensus disorder prediction 60 108 - -
Aed5g1262 679 Pfam Tetratricopeptide repeat 213 273 - -
Aed5g1262 679 Gene3D Tetratricopeptide repeat domain 205 565 IPR011990 GO:0005515
Aed5g1262 679 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Aed5g1262 679 Gene3D Glutaredoxin 572 678 - -
Aed5g1262 679 MobiDBLite consensus disorder prediction 1 201 - -
Aed5g1262 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 677 - -
Aed5g1262 679 SUPERFAMILY TPR-like 207 434 IPR011990 GO:0005515
Aed5g1262 679 Pfam Tetratricopeptide repeat 481 512 IPR001440 GO:0005515
Aed5g1262 679 SUPERFAMILY Thioredoxin-like 482 677 IPR036249 -
Aed5g1262 679 Pfam Thioredoxin 586 674 IPR013766 -
Aed5g1262 679 CDD TRX_family 584 674 - -
Aed5g1262 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 677 IPR044534 -
Aed5g1262 679 SMART tpr_5 399 432 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 513 546 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 479 512 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 241 274 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 445 478 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 351 384 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 207 240 IPR019734 GO:0005515
Aed5g1262 679 SMART tpr_5 275 309 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1262 Aed-Chr5 11674166 11678174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1262 444 589 U-box Gene Family AT3G07370 27.869 7.80e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1262 5 11674166 11678174 Aed5g1262 5 11674166 11678174 ECH
Aed1g0541 1 6961907 6966471 Aed5g1262 5 11674166 11678174 PCT
Aed5g1262 5 11674166 11678174 Aed1g0760 1 8598117 8601070 PCT