Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1248 ATGGATCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCTTCAACAGTGACTCCGCCGACCCTCTCAAACTCTCCCCCTCCGACGCCCGCAAGCTCATCGAGCGCTTCACCCCGGACCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACCCCGACGTCCTCTCCGCCGTGCGCGCCGTCGCCGACTCCGACGTCTCCCAGCGCAAGCTCTTCATCCGTGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCCCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTCATCCTCGACAAGGCCACCGGGAAGTCCAAGGGCTACGGCTTCGTCACGTTCCGCCACGTCGACGGCGCGCTCCTCGCCCTCCGCGAGCCCAGCAAGCGCATCGACGGCCGCGTCACGGTCACGCAGCTCGCCGCGGCCGGGAACTCGGCCTCGAACGCCAACGCGGCCGACGTCGCTCTCCGGAAGATCTACGTCGCCAACGTACCGCCGGACCTCCCCGCGGACAAGCTCCTCGCGCACTTCTCCGTATACGGCGAAATCGAAGAGGGTCCGTTAGGGTTTGATAAACAGACAGGAAAATCGAAAGGGTTCGCTTTGTTTGTTTATAAAACTCCAGAAGGGGCTCAGGCCGCGTTGATAGATCCTGTGAAGACTGTTGAAGGGAGACAGTTGAGTTGTAAGTTGGCAATTACTGATGGGAAGCAAGGGAAGCGGGCCGGGCCGGACTCGGCCCAGGCCCATGGAAATGTTCAGCACGGACACGGGGATGCAGTTGGAGCCGGAATGGGGATGCCTCCTAATGCGGGGTCTGGGCCCGGGCAGTACGGTGGGCCTGGACAGTACGGAGGCCCGGTTGGGCTTGGCTCTTATGGAGGATTTGGTGGGCAGCCTCCGATGGGCAATCATAACCATCCTCTGAACTCGTCGAATCCCGTGCCGGGATCGGGGTCTATGGCGGGTGCTGGTGGGTATGGTAGCGCTGGGATGGGTGGACCCTATGGCGGGTACGGTGGACCGGGATCGACGGGCTTTGGTGGCGCTGGAGGGTTGGGAGGAGGTAGTGGAGGTACTGGTGGTGGGCTTAGTGGTGGTGGTGGTGGTGGTTCTATGTATAGATTGCCGGGTTCTGGTGGAATGGGTGGAATGCCTGCTGGTGGTGGAGGGTATCAGGAGGGTGGACACTATGGTTTATCAGCTTCATCTGGGTACCAGAATCAGCATCACCCTCCTTCCGGGACTTCACCTATGCCTAGGTTGCCGCCAGCTTCGATGTGTATCATCGCTTATTGGGCGCAGATGCTTTGTGTGCCTCTGTTCTCAAATGGTGATGAAGGACCCGATGCCATGGACCTTAGTGCTGCACCTCTATCTAATGTATGTATCGACTTGTACGGTAAAGTCAGTTTTGTGATAACGTTTCTTTTACTTAATATTTATAAGAGAATTGATAAGAGTATAGTCACTTAA 1491 0.5915 MDPTKKRKLDENGFNSDSADPLKLSPSDARKLIERFTPDQLLDILQDAVARHPDVLSAVRAVADSDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALIDPVKTVEGRQLSCKLAITDGKQGKRAGPDSAQAHGNVQHGHGDAVGAGMGMPPNAGSGPGQYGGPGQYGGPVGLGSYGGFGGQPPMGNHNHPLNSSNPVPGSGSMAGAGGYGSAGMGGPYGGYGGPGSTGFGGAGGLGGGSGGTGGGLSGGGGGGSMYRLPGSGGMGGMPAGGGGYQEGGHYGLSASSGYQNQHHPPSGTSPMPRLPPASMCIIAYWAQMLCVPLFSNGDEGPDAMDLSAAPLSNVCIDLYGKVSFVITFLLLNIYKRIDKSIVT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1248 496 CDD RRM_RBM24_RBM38_like 162 237 - -
Aed5g1248 496 SUPERFAMILY RNA-binding domain, RBD 63 146 IPR035979 GO:0003676
Aed5g1248 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 239 IPR000504 GO:0003723
Aed5g1248 496 MobiDBLite consensus disorder prediction 1 23 - -
Aed5g1248 496 CDD RRM_RBM24_RBM38_like 70 144 - -
Aed5g1248 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 139 IPR000504 GO:0003723
Aed5g1248 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 221 IPR000504 GO:0003723
Aed5g1248 496 Gene3D - 151 291 IPR012677 -
Aed5g1248 496 SUPERFAMILY RNA-binding domain, RBD 150 264 IPR035979 GO:0003676
Aed5g1248 496 MobiDBLite consensus disorder prediction 241 322 - -
Aed5g1248 496 Gene3D - 50 150 IPR012677 -
Aed5g1248 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
Aed5g1248 496 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 388 - -
Aed5g1248 496 PANTHER GEO13361P1-RELATED 1 388 - -
Aed5g1248 496 SMART rrm1_1 163 235 IPR000504 GO:0003723
Aed5g1248 496 SMART rrm1_1 71 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1248 Aed-Chr5 11438976 11444137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1248 158 246 C2H2 Transcription Factor Family AT2G19380 40.000 8.44e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1248 5 11438976 11444137 Aed5g1248 5 11438976 11444137 ECH