Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1199 ATGGCCCCGAGGGATAACAACAGATCTAATGTTGTTGTCGTTGCCGCCGCCGGATCCAACCCGCCCCATAAAGAGATCCGATACCGCGGCGTCAGGAAGCGGCCGTGGGGCCGTTACGCCGCCGAGATCCGCGACCCCGGCAAGAAAACCCGCGTCTGGCTAGGAACCTTCGACACGGCGGAAGAGGCGGCACGTGCGTACGACGCGGCGGCGCGTGATTTTCGCGGAGTGAAGGCGAAGACCAATTTCCCCAACCATGCGGAGATGACCCATCCCCACGCGGCGGCAGCGCGTAGCCCTAGTCAGAGCAGCACGCTGGAGTCCTCCTCTCCGCCACCGCCGCCGCTGGACCTCACTCTCGCCGCCGCTGGCGAGTTGGTGTTCCCGGTGGCGCGTCCCGTGGTTTTCTTCGACGCGTTCGCGCGTTCAGAGGTGCGCGCGTCGTTCGATCTTCCCGTGGCTGCGTTCAGCGACTCGGACTCGTCCTCGGTCGTGGACTACGAGCGGGTCCCACATCGGAGAGTGTTGGATCTTGACCTCAATGTCCCTCCTCCACCCGAGGTTGCCTGA 570 0.6474 MAPRDNNRSNVVVVAAAGSNPPHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGVKAKTNFPNHAEMTHPHAAAARSPSQSSTLESSSPPPPPLDLTLAAAGELVFPVARPVVFFDAFARSEVRASFDLPVAAFSDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1199 189 MobiDBLite consensus disorder prediction 88 116 - -
Aed5g1199 189 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Aed5g1199 189 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Aed5g1199 189 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 180 - -
Aed5g1199 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 21 180 - -
Aed5g1199 189 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Aed5g1199 189 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Aed5g1199 189 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Aed5g1199 189 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Aed5g1199 189 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
Aed5g1199 189 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1199 Aed-Chr5 10642057 10642626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1199 17 145 AP2-EREBP Transcription Factor Family AT3G15210 59.732 1.16e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed5g1199 AP2 7.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0880 5 6688100 6688711 Aed5g1199 5 10642057 10642626 ECH
Aed5g1199 5 10642057 10642626 Aed9g0543 9 3785601 3786269 ECH
Aed5g1199 5 10642057 10642626 Aed5g1199 5 10642057 10642626 ECH