Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1196 ATGGAAGGAATAACTTCAAACATGAACATGACAAGTGGAGATTGGTTTTGGGAGATTTGCTCTATAGCTGAGGCAGGAGACATAGATGATCTCTATAGAGTGATTAAGAAGAATCCACGTGTTTTGGATGATGTAGATTTAATACCATTTATTAACACTCCTTTGCATGTTGCTGCATTTTATGGACATCTCCCCTTTGCTAATGAGATTATGAGATTGAAACCTTCATTCGCTTGGAAATTAAATGAAGACGGGTTCACTCCCATCCACCTTGCTTTACAACAAAAACATTATCAAATGGTTCGTCGCTTTGTATTAATGAACGAAGACCTTGTTCGTGCCAAAGGGAAGGAAGGTTATACTCCGCTACACTCCACAGCTGAAAACGGAGAAATTGCCCTTTTGATTTGGTTCCTTCGAGTTTGTCCAGAGTCCATTGAAGATGTAACCATTAGAAGTGAGACTGCGCTGCATATTGCAGTGAGATGTGGACAGTATGAGGCTCTTCAAGTCCTAGTTGGTTGGCTCATGAGAACTTCGCAAACAGATGCCTTAGAGTTGGAAAAAAGAATATTGAATTGGGGAGATGAAGACAACAATACCATTTTACACGTTTCCTCACGCGAAAACAACAGACAGATGGTTCAACTGTTGGTAAAGACTAAGGTGGATTTGAAGGTGAAGAATAATGAGGAAAGATCAGCATTAGACATAGCAAGTAACGATGAGATCAGAAGTATATTAGTCCGGGCTGGATCTTTCTCGGATATTGTACCAAAGCAAACCTTTGCAGATAGATTAAAATCGAAGATGACATTGATGGATAGAATGATTACCTTTATATATCGCAAGACAAGTTCTATAACAGAGGAAAAACGCAATGCTTATCTGATAATTGCTGTTCTGATTATAACCACTACATATCAATTTGCACTGACCCCTCCTGGTGGAGTTTATCAGCCTAACGCTGTCGACAATAATAATGCATTAATTAATGCCACTTCTCTCATCAATTCTACTTCTACACAAGGGAAAGCTGGGACATCGGTCTTGTCTGGAGAAGAATTCTTTGGTCTATCCTATTCCAATATGCTTTCCTTTACGTTCTCAATTATGGTCATCCCTTTTATGATTCAACCAGGAGTCTTCTATCTACTGTACTGGCCAATTCTTTGCTTGATCATCAGCTATGTCATTTCCATGAAAGTGATATCTGGTAACAATGATGTGCTTTGCTATCAGCTTATTCCTAGTGCCATTACCGCTGTCTTTGGCGTCTGCGCGGGCGCAGCGTTCATGACCTTTGAAATAGGGAGAATCTATAGTAAACAACGTGCAGCAGATGAAATATACGGTAGATAG 1362 0.3979 MEGITSNMNMTSGDWFWEICSIAEAGDIDDLYRVIKKNPRVLDDVDLIPFINTPLHVAAFYGHLPFANEIMRLKPSFAWKLNEDGFTPIHLALQQKHYQMVRRFVLMNEDLVRAKGKEGYTPLHSTAENGEIALLIWFLRVCPESIEDVTIRSETALHIAVRCGQYEALQVLVGWLMRTSQTDALELEKRILNWGDEDNNTILHVSSRENNRQMVQLLVKTKVDLKVKNNEERSALDIASNDEIRSILVRAGSFSDIVPKQTFADRLKSKMTLMDRMITFIYRKTSSITEEKRNAYLIIAVLIITTTYQFALTPPGGVYQPNAVDNNNALINATSLINSTSTQGKAGTSVLSGEEFFGLSYSNMLSFTFSIMVIPFMIQPGVFYLLYWPILCLIISYVISMKVISGNNDVLCYQLIPSAITAVFGVCAGAAFMTFEIGRIYSKQRAADEIYGR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1196 453 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 23 424 - -
Aed5g1196 453 ProSiteProfiles Ankyrin repeat profile. 198 230 IPR002110 GO:0005515
Aed5g1196 453 PANTHER HOMEOBOX PROTEIN WARIAI 23 424 - -
Aed5g1196 453 SMART ANK_2a 84 113 IPR002110 GO:0005515
Aed5g1196 453 SMART ANK_2a 198 227 IPR002110 GO:0005515
Aed5g1196 453 SMART ANK_2a 118 148 IPR002110 GO:0005515
Aed5g1196 453 SMART ANK_2a 152 183 IPR002110 GO:0005515
Aed5g1196 453 SMART ANK_2a 50 79 IPR002110 GO:0005515
Aed5g1196 453 Pfam Ankyrin repeats (many copies) 191 239 IPR002110 GO:0005515
Aed5g1196 453 SUPERFAMILY Ankyrin repeat 48 239 IPR036770 -
Aed5g1196 453 Gene3D - 15 250 IPR036770 -
Aed5g1196 453 ProSiteProfiles Ankyrin repeat region circular profile. 198 230 - -
Aed5g1196 453 Pfam Domain of unknown function 289 379 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1196 Aed-Chr5 10599516 10601439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1196 24 327 Miscellaneous Gene Families AT4G10720 43.312 1.91e-81 256