Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1195 ATGAGTACGACGAGTGAAGATAGATTGAAGAATGCTGCTCGAGAGGGAGACATAAACCTTTTATACACAGTGATTCAAGAGAATCCACGTGTTTTGGAAGACATAGATTCAATGCCATTTGTTGAGACTCCTTTGCACATTGCAGCATTTGTGGGGCATCTCCAATTTGGTGTTGAGATTATAAGATTGAAACCTTCATTTGCTTGGAAACTAAATGTGCAAGGATTCACCCCCATCCATGTTGCTCTATTACACGGTTATAATAGAATGGTCCTTCGGATTATACAAATCGACAAAGAGCTTGTTCGAGCCAAAGGGAGGGAAGGTCTCACACCTTTGCATCTTGTAATTCAAGAAGAAGATATGGACCTTTTGCCCAAGTTCCTTGAGGCTTGCCCTAGTTCCATTAGTGATGTGACTATAAGAAATGAGACTGTCTTGCATATTGCGGTGAAATATCGAAAGGTGAAGGCTCTTCAATTCTTGGTTAAGTGGCTTGGCACAAATTCTGTGGAGAAAACCATCTTAAATTGGAAAGATGAGTGTGACAACACTATTTTACACATTGCCGCATCCAACAGTGACACGGAGGTAATTGCACTGTTGATGAAGAATGGGAGGACGAGTTTAGATGCAAGGAATTTGGAGGGTCTTACAGCGTTAGACGTAGCACCTAGCGAAGGTGTCAAGAGGAGTTTAGTAAGGACCGAAACAACAGTTGAAGTGATTTGGAAATATTTCCTCAAAATTAATAAAAAAATTGATCTGTTCTTGGAATCTAGGAATGAAGCGATGATTCGCATAACTGGTTTGAGAGAGCCAATGTCAGAAGAGGTACGTAACGCATATTTGACCGTGGCCACTCTTGTTGCCACCAGCATGTATCAGTCTATGACCTCCATTTATCAAATTGCCCAAAGTACCCCTGGTGGACTTGGCCAAACCGAGGTTGGGACTAATACTACTCTCTCTCATCATCTGGCCTCCAATAATTCATCCATCATCAATTCCAAACCAATTACTGCAAATGAACAAAACTCATTCATTTCAAACGAAAGGTTCATTTGGATTGCGATCATGAATTTGTCTGCCTTTACATTATCATGTTTCACAATTGTGTCTTTGTTGCCGAGGAAGAATGTTGCCTCGAGAGCACTGGGTTTCTCAATGGAACTCCTTGTCTTTAGTTACTTCTCCTTTATATTAGGCTTTGCTCCCTCTCCTTTTCACACAATCATTGGCAAAATTTCCGCTTTCCTAGTATACATTTGCTCGGCAGTGATAACTCACGTATTGTTCGTTAACGTATATATACACGAGTACACTCTAACAACTTGTAAATAA 1344 0.4062 MSTTSEDRLKNAAREGDINLLYTVIQENPRVLEDIDSMPFVETPLHIAAFVGHLQFGVEIIRLKPSFAWKLNVQGFTPIHVALLHGYNRMVLRIIQIDKELVRAKGREGLTPLHLVIQEEDMDLLPKFLEACPSSISDVTIRNETVLHIAVKYRKVKALQFLVKWLGTNSVEKTILNWKDECDNTILHIAASNSDTEVIALLMKNGRTSLDARNLEGLTALDVAPSEGVKRSLVRTETTVEVIWKYFLKINKKIDLFLESRNEAMIRITGLREPMSEEVRNAYLTVATLVATSMYQSMTSIYQIAQSTPGGLGQTEVGTNTTLSHHLASNNSSIINSKPITANEQNSFISNERFIWIAIMNLSAFTLSCFTIVSLLPRKNVASRALGFSMELLVFSYFSFILGFAPSPFHTIIGKISAFLVYICSAVITHVLFVNVYIHEYTLTTCK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1195 447 SMART ANK_2a 40 69 IPR002110 GO:0005515
Aed5g1195 447 SMART ANK_2a 142 173 IPR002110 GO:0005515
Aed5g1195 447 SMART ANK_2a 182 212 IPR002110 GO:0005515
Aed5g1195 447 SMART ANK_2a 108 138 IPR002110 GO:0005515
Aed5g1195 447 SMART ANK_2a 74 103 IPR002110 GO:0005515
Aed5g1195 447 Gene3D - 3 261 IPR036770 -
Aed5g1195 447 Pfam Ankyrin repeats (many copies) 176 224 IPR002110 GO:0005515
Aed5g1195 447 SUPERFAMILY Ankyrin repeat 9 228 IPR036770 -
Aed5g1195 447 ProSiteProfiles Ankyrin repeat profile. 182 206 IPR002110 GO:0005515
Aed5g1195 447 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 12 432 - -
Aed5g1195 447 ProSiteProfiles Ankyrin repeat region circular profile. 182 206 - -
Aed5g1195 447 PANTHER HOMEOBOX PROTEIN WARIAI 12 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1195 Aed-Chr5 10575333 10576825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1195 9 401 Miscellaneous Gene Families AT5G15500 32.394 6.86e-62 206