Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1188 ATGAGTAATGTCCAGTTGAGTCCGAGTCCGGCTGAAGCCGGAGACATAAACAGTCTCTACGAAGAGATTAAGGCGGATCCACGTGTTTTGGAGCATGCAGATTCGATGCCATTTGTTGAGACTCCTCTGCATGTTGCTGTATCTAAGGGGCATCTCCAGTTTGCTACCGACGTCATGAGATTGAAACCTTCGTTTGCCTGGAAACTAAATCCACAAGGATTCACTCCCATCCATCTTGCTTTACAACAAGGCCATAAAACAATGGTGCATCGACTCGTAGACATCAACAGAGACCTCGAAGGTGTCACTCCTCTACATTTTGTAAGCCAATCTGGAGATATTGACCTTTTAGTTGATTTCCTTTTGCTATGTCCAGATTCCATTCGAGATGTAACTGTTAGAAGTGAGACTGTACTGCATATTGCGATAAAACATCAACAGAACGAAGCTCTTCATGTCTTGCTTGGTTGGCTCATGATAGCACCCATGAGACCTGTTCCTAGAAGAACAATATTGAGGTGGAAGGATGAGGCGGGTAACACCATTTTGCGCATTTCAGCGCCAACAAATAACTCGGAGGCGGTTCGATGGTTGGTAAAGACTAAGAAGATAGATCTGGAGGCTAAGAATTTGGAGAACAAAATATCATTAGACATAGCAGGCAATGAAGAGGTCAAAAATATATTAGAAAGTGCCGGAGCAAAACGTGTTTCACCAATTTCTGATGCTCCATCCTTTGCAGATAAACTAAAATCGAATATCAGTATTGTGGATAAAATAATTAATAATATTTGGTACATTAATAGGAATATAACAGAGAACCAACGCAACGTATTTCTTATAATTGGCACTCTTATTGCAACTGCCACGTATCAAACAGCACTGCGTCCCCCTGGGGGAGTTTATCAAGCTAATGCTGTGGAAAATAAAGTCAACAGTACCACTTCCCTCAAATTTATGGCAATTGCTCGGCGAGAAAACTTTGCGTCTGGGAGATCGGTCATATCTGGAACCGATTTCCTTTTAATATCGTCTCTCAATGCACTTTCCTTTTCAGTATCGATTATGACAATCTTTGTGCTGATTCCACGCAAATTGCTCAGAATACTATTTTTGCCAATGTTTTGGTTTGTCAACTGCTACCTCTATTCTTTGTTGGTGATATCCCCAGACTCTGCTTCTATATTTGTTTGTTTTTTTCTGTCCTTGTTATTCAACTTGTTGATGTTAGCAGTGTATTCCCTATTTCCTAGGGCGTACAGAAGACTATGGGTCCTGCTAACCGGAAAATTGAAACAAGGAATATTGCAGGGGGGAATATATGGTAGTTATATTCCAGTTTATTGTGTACAACATTATATCTTGAAGATTGATCAATCTCTTTGTATTAGTTAA 1395 0.4036 MSNVQLSPSPAEAGDINSLYEEIKADPRVLEHADSMPFVETPLHVAVSKGHLQFATDVMRLKPSFAWKLNPQGFTPIHLALQQGHKTMVHRLVDINRDLEGVTPLHFVSQSGDIDLLVDFLLLCPDSIRDVTVRSETVLHIAIKHQQNEALHVLLGWLMIAPMRPVPRRTILRWKDEAGNTILRISAPTNNSEAVRWLVKTKKIDLEAKNLENKISLDIAGNEEVKNILESAGAKRVSPISDAPSFADKLKSNISIVDKIINNIWYINRNITENQRNVFLIIGTLIATATYQTALRPPGGVYQANAVENKVNSTTSLKFMAIARRENFASGRSVISGTDFLLISSLNALSFSVSIMTIFVLIPRKLLRILFLPMFWFVNCYLYSLLVISPDSASIFVCFFLSLLFNLLMLAVYSLFPRAYRRLWVLLTGKLKQGILQGGIYGSYIPVYCVQHYILKIDQSLCIS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1188 464 ProSiteProfiles Ankyrin repeat profile. 72 104 IPR002110 GO:0005515
Aed5g1188 464 Pfam Ankyrin repeats (3 copies) 105 209 IPR002110 GO:0005515
Aed5g1188 464 Pfam Ankyrin repeats (3 copies) 28 94 IPR002110 GO:0005515
Aed5g1188 464 Pfam Domain of unknown function 272 366 IPR026961 -
Aed5g1188 464 ProSiteProfiles Ankyrin repeat profile. 100 122 IPR002110 GO:0005515
Aed5g1188 464 ProSiteProfiles Ankyrin repeat region circular profile. 100 122 - -
Aed5g1188 464 Gene3D - 7 232 IPR036770 -
Aed5g1188 464 ProSiteProfiles Ankyrin repeat region circular profile. 72 100 - -
Aed5g1188 464 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 11 416 - -
Aed5g1188 464 SUPERFAMILY Ankyrin repeat 14 234 IPR036770 -
Aed5g1188 464 SMART ANK_2a 72 99 IPR002110 GO:0005515
Aed5g1188 464 SMART ANK_2a 38 67 IPR002110 GO:0005515
Aed5g1188 464 SMART ANK_2a 178 208 IPR002110 GO:0005515
Aed5g1188 464 SMART ANK_2a 100 130 IPR002110 GO:0005515
Aed5g1188 464 PANTHER HOMEOBOX PROTEIN WARIAI 11 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1188 Aed-Chr5 10453826 10455869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1188 14 320 Miscellaneous Gene Families AT4G10720 37.963 1.14e-69 225