Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1187 ATGGCTTCAAACATGAACACAACAAGTTATAACAACTTGAAAGCAGCGGCACAAGATGGAGATATAAACCTTCTCTATGCAGCAATTGAGGAGGAACCACAAGTTTTGGAGCACAACGATTCAATATCATTCGTTGAGACACCTTTGCATATTGCTGCATCGTGTGGAAATTTAGGGTTTGCCACTGAGATTATGAGGCTGAAACCTTCTTTTGCTTGGAAGTTGAATCCACAAGGATTCACACCTATTCATCTTGCTATGCAGCACAACCATAAGAGAATGGTGCTTCGCTTTGTAGACATTAACAAAGAGTTGGTTCGAGCCAAAGGGAGGGAAGGCCTCACTCCTTTGCATTTTGCAAGTCAAGTTGGAGAGATTGAACTTTTGGCTAAATTTCTCCTGGCTTGTCCAGATTCTATTGAAGATGTGAGTATTAGAGGTGAGACTGCACTACATATTGCAGTGAGATATCAACAGTTTGAGGTTCTTCAAGTCCTGGTTGGATGGCTCAAGAGAACATGCCATGAGAATGCCATGCAGATAGAAAAAACAATACTGAACTGGAAGGATGAGGGAGGCAACACCATTTTGCACGCACTTGGATTGTTGCTAAAGACTAAAGTGAATTTGAAGGCCAAGAATTTGGAGAACTCAACAGCACTAGACATAGAAGCCAGTACAGAGATAAAGAATGCATTAGTAAGAGCTGGTGCAAAACATGGTTCATCAGTTACTAATACTATTACTCCCACCCTTAAGGATAAATCAAGATGCAATATCACACTTATAGAAAAAATAATTATATTTGTACTTCGGATCAGAAGGGATATAACAGAAGACCAACGCCAAGCTTTTCTCATAGTTGCTGCTCTTATTGCAACCGCTACATATCAATCAGCACTAAGTCCCCCTGGTGGAGTTTTCCAAGCTAATGCTGGAAACAATAATAACGACAACAATAACAATAACAATGTTAATAGCACTTCCCTCAATGCTGGAACTTCTGTGATTTCTGAAGGTGATTTCTTTACCTTATCGATTATGAATTCACTTTCTCTTTTGGTTTCAACCGTAACAATCTACATTCTGACGCCAAGTGGGGTGGTGGGTAGTGTATTGTTGATACCAATGTGTTGGTTTGCATACTGCTATCTCTATTCTTTAAGGGTCATATCCCCTACTAGTGCTACCAAAATTTTCAATTTGGTTATGCTGTGTTTATTCTCCTCCTTGTACTCGGGGGTATGGTGGACATTTTCCATAGCGTGCAAGAGACTTAAGGGTTATGATAAGAAGAAGGATACCGATCAAACAAGGAATAGTACTACAGGAAGAAATATATGGTAG 1347 0.3987 MASNMNTTSYNNLKAAAQDGDINLLYAAIEEEPQVLEHNDSISFVETPLHIAASCGNLGFATEIMRLKPSFAWKLNPQGFTPIHLAMQHNHKRMVLRFVDINKELVRAKGREGLTPLHFASQVGEIELLAKFLLACPDSIEDVSIRGETALHIAVRYQQFEVLQVLVGWLKRTCHENAMQIEKTILNWKDEGGNTILHALGLLLKTKVNLKAKNLENSTALDIEASTEIKNALVRAGAKHGSSVTNTITPTLKDKSRCNITLIEKIIIFVLRIRRDITEDQRQAFLIVAALIATATYQSALSPPGGVFQANAGNNNNDNNNNNNVNSTSLNAGTSVISEGDFFTLSIMNSLSLLVSTVTIYILTPSGVVGSVLLIPMCWFAYCYLYSLRVISPTSATKIFNLVMLCLFSSLYSGVWWTFSIACKRLKGYDKKKDTDQTRNSTTGRNIW 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1187 448 PANTHER HOMEOBOX PROTEIN WARIAI 16 424 - -
Aed5g1187 448 ProSiteProfiles Ankyrin repeat region circular profile. 112 134 - -
Aed5g1187 448 Pfam Domain of unknown function 278 366 IPR026961 -
Aed5g1187 448 Pfam Ankyrin repeats (3 copies) 106 167 IPR002110 GO:0005515
Aed5g1187 448 ProSiteProfiles Ankyrin repeat region circular profile. 146 167 - -
Aed5g1187 448 SUPERFAMILY Ankyrin repeat 6 223 IPR036770 -
Aed5g1187 448 SMART ANK_2a 112 142 IPR002110 GO:0005515
Aed5g1187 448 SMART ANK_2a 146 176 IPR002110 GO:0005515
Aed5g1187 448 SMART ANK_2a 78 107 IPR002110 GO:0005515
Aed5g1187 448 SMART ANK_2a 44 73 IPR002110 GO:0005515
Aed5g1187 448 ProSiteProfiles Ankyrin repeat profile. 146 167 IPR002110 GO:0005515
Aed5g1187 448 ProSiteProfiles Ankyrin repeat profile. 112 134 IPR002110 GO:0005515
Aed5g1187 448 Gene3D - 6 236 IPR036770 -
Aed5g1187 448 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 16 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1187 Aed-Chr5 10425759 10427974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1187 13 389 Miscellaneous Gene Families AT4G10720 39.206 5.99e-83 259