Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1185 ATGGAGAGAAAAAGAGCATTGTTGGTTGAGAGGATGAGGAAGAATAGCACAGTGGAGGAGGAAGTGGAGAATAATGAAGTGGAGGAGGAGGATGAAAGTGGTGTTAGTGTTACTGAAGAAGAGAAGAAGAAAGGGGTTAGTAGCAGTGGTGGGAGAAGAGGGTCAAGTGGTGGTGGTGGTGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCTGAGAGGTGTGGTGCTGACTTGACTGATGCAAAAAGGTACCATCGCCGCCACAAGGTGTGTGAATTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCTGAGTTTGATGAGTCCAAGAGAAGCTGCCGCCGACGGTTAGCTGGACACAACGAGCGGCGCCGGAAGAGTAACCCAGAAGCCACCGCCAACGAAGGCGGCAGCAGCAAAGGCCATCAACAGCCTAAGGAAACAACAACAACAACAACACACTGCAGGCTTGCAGATGAGAGGGGGAGAATTCAAATGAACCTTCAAGGGAGTTCTTCTGGCTACAAATCCTTCAACATCAGATGA 597 0.5092 MERKRALLVERMRKNSTVEEEVENNEVEEEDESGVSVTEEEKKKGVSSSGGRRGSSGGGGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEATANEGGSSKGHQQPKETTTTTTHCRLADERGRIQMNLQGSSSGYKSFNIR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1185 198 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 178 - -
Aed5g1185 198 MobiDBLite consensus disorder prediction 134 178 - -
Aed5g1185 198 MobiDBLite consensus disorder prediction 148 169 - -
Aed5g1185 198 MobiDBLite consensus disorder prediction 1 21 - -
Aed5g1185 198 Pfam SBP domain 70 143 IPR004333 GO:0003677
Aed5g1185 198 Gene3D - 61 131 IPR036893 GO:0003677|GO:0005634
Aed5g1185 198 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Aed5g1185 198 MobiDBLite consensus disorder prediction 1 71 - -
Aed5g1185 198 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 178 IPR044817 GO:0003677
Aed5g1185 198 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1185 Aed-Chr5 10361716 10364082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1185 53 158 SBP-box Gene Family AT1G53160 66.038 6.46e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed5g1185 SBP 1.2e-31 No_clan