Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0880 ATGGCGAAAGAGAAGAGCGCGACGACGCCGAAGAGCAAGAAGCCAAACAATGCTGACGAGGTTCACTTCCGCGGCGTCCGGAAGCGTCCATGGGGCCGCTACGCCGCCGAGATCCGCGACCCCACCAAGAAGAGCCGCGTCTGGCTTGGCACCTTCGACACCGCCGAGGAAGCCGCCCGCGCCTACGACGCCGCCGCCCGCAGCTTCCGCGGCTCCAAAGCCAAAACCAACTTCCCCCCCGACCACACCACCAACAACGTTAACAACACCACCAACGACAGTCCCAGCCAGAGCAGCACCGTGGAGTCCTCCGCCCCGGAGCGTGAAGTCACGCGCCGCCCCGCTGCCACCCCCGCCGCAATCGACCGCTTCCCGTTCCTCCCCATCCAGCAGCAGCAGATCCTCGTGACCCCAGTCGTCGCGGCGCCCATGCGTCCGGTTTACTTTCTCGACCGCGCCCACTTCATGACCCAGCCGTTCCCGATCCGGTTCGAACCGGGTCCGGTCCAGAGCGACTCCGACTCCTCCTCTGTCGTGGATTGTCAGCAGCAGCAGCAGCCCAAGAGAGAGCTGAATCTCGATCTCAACCTGGCGCCTCCTAATGAATATTAA 612 0.6422 MAKEKSATTPKSKKPNNADEVHFRGVRKRPWGRYAAEIRDPTKKSRVWLGTFDTAEEAARAYDAAARSFRGSKAKTNFPPDHTTNNVNNTTNDSPSQSSTVESSAPEREVTRRPAATPAAIDRFPFLPIQQQQILVTPVVAAPMRPVYFLDRAHFMTQPFPIRFEPGPVQSDSDSSSVVDCQQQQQPKRELNLDLNLAPPNEY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0880 203 MobiDBLite consensus disorder prediction 1 40 - -
Aed5g0880 203 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Aed5g0880 203 MobiDBLite consensus disorder prediction 169 191 - -
Aed5g0880 203 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Aed5g0880 203 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Aed5g0880 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 103 - -
Aed5g0880 203 MobiDBLite consensus disorder prediction 66 114 - -
Aed5g0880 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 103 - -
Aed5g0880 203 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Aed5g0880 203 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Aed5g0880 203 MobiDBLite consensus disorder prediction 165 203 - -
Aed5g0880 203 MobiDBLite consensus disorder prediction 77 105 - -
Aed5g0880 203 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Aed5g0880 203 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Aed5g0880 203 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0880 Aed-Chr5 6688100 6688711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0880 20 200 AP2-EREBP Transcription Factor Family AT5G44210 50.265 4.39e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed5g0880 AP2 5.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0880 5 6688100 6688711 Aed5g1199 5 10642057 10642626 ECH
Aed5g0880 5 6688100 6688711 Aed5g0880 5 6688100 6688711 ECH
Aed5g0880 5 6688100 6688711 Aed9g0543 9 3785601 3786269 ECH