LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed1g0755	ATGGCTGCTCGTAACATTGAGAAGATGACCTCAATTGATGCTCAGTTGAGGTTGCTGGCACCACGCAAGGTGTCTGATGATGACAAACTCGTTGAGTATGATGCTTTGTTGCTGGACCGTTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTCCAAGACTGTTATGAGCTGTCAGCTGAGTACGAAGGGGAGCATAAGCCGGAAAAGTTGGAGGAACTTGGGAATATGCTGACTGGTCTTGATGCTGGGGATTCAATTGTTATCGCCAAGTCATTTTCTCACATGCTTAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTACCGAAGAAGGATCAAGTTACTGAAGAAGGGTGATTTTGCTGATGAGAACTCTGCTATTACTGAGTCTGACATTGAAGAGACCTTCAAGAAGCTTGTGGCTCAACTCAAGAAGACCCCCCAGGAAATCTTTGATGCTGTCAAGAACCAAACTGTGGACTTGGTCCTCACTGCTCATCCTACTCAGTCTGTTCGCAGATCGTTGCTGCAAAAGCATGGAAGGATAAGGAATTGTTTGACACAATTATATGCCAAGGACATAACACCAGATGATAAACAGGAACTTGATGAGGCTTTACAACGAGAGATTCAAGCTGCATTTCGCACAGACGAAATTCGAAGGACTCCTCCTACACCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCACGAGACAATATGGAAAGGTGTACCACAGTTTCTGCGCAGGGTTGATACAGCTCTGAAGAACATTGGAATAAATGAACGCGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAATCCTAGAGTAACCCCTGAAGTTACAAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATATGTACTTCTCTCAGATAGAGGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCACTGACGAGCTCCGTTTCCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTATATTGAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTGAGAGACAAATTGTATAACACACGTGAACGTTCTCGCCAATTATTAGCCAATGGAACCTCTGATATCCCTGAGGAGACAACCTTCACTAACGTTGAGCAGTTCCTGGAGCCTCTTGAACTATGCTACGGGTCACTCTGTGCATGTGGTGACAGAGCTATAGCAGATGGAAGCCTCCTTGATTTCCTGCGACAAGTTTCCACATTCGGACTCTCACTAGTGAGGCTTGATATCCGTCAAGAGTCAGATAGGCACACTGATGTCATGGATGCAATCACAAAACACTTAGAAATTGGATCATACAGAGAATGGAGCGAGGAAAAGAGGCAAGAGTGGCTCTTATCAGAGCTCAGTGGAAAACGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCAATGATGTCTTAGAAACCTTCCATGTCATCTCAGAGCTTCCCTCAGACAACTTCGGTGCCTACATCATATCAATGGCAACGGCACCATCTGATGTGCTAGCAGTTGAGCTCTTACAACGTGAGTGTCATGTGAAGCAGCCTTTAAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCTGCTCCGGCCGCAGTGGCGCGGCTCTTCTCTGTAGATTGGTACAGAGAGCGGATCAATGGGAAGCAGGAAGTTATGATAGGGTACTCAGACTCAGGTAAAGATGCTGGCCGGTTCTCTGCGGCTTGGGCGCTTTACAAGGCTCAAGAGGAACTTGTGAAGGTTGCTAAGGACTATGGTGTGAAACTCACAATGTTTCATGGGAGAGGAGGGACTGTTGGAAGAGGAGGAGGTCCAACTCATCTTGCTATATTGTCTCAGCCACCAGACACCATTCATGGCTCGCTTCGGGTGACGGTTCAGGGTGAAGTCATTGAGCAGTCTTTTGGAGAGGAGCACTTGTGCTTTAGGACACTTCAGAGGTTCACTGCAGCTACACTTGAGCATGGCATGCATCCTCCTGTGTCACCTAAACCGGAATGGCGCGCCCTCATGGAAGAGATGGCTGTCATTGCAACCAAGGAGTATCGCTCTGTTGTTTTCAAAGAACCTCGCTTTGTTGAATACTTCAGATGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGAGAAAACCAAGTGGAGGAATTGAGTCACTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACAAGGTTTCATTTGCCAGTGTGGCTTGGCTTTGGAGAAGCATTTAAACATGTGATTGAGAAAGATCCAAAGAATCTCCAAATGCTTCAGGATATGTACAACCAATGGCCTTTCTTCAGGGTCACCCTTGACTTGGTTGAGATGGTGTTTGCTAAGGGAGACCCAGGGATTGCATCGCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAGAATTTAAGAGCTAAATATGAAGAAACCAAGAGCTTTCTCCTCAAGGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTTGTCTTCGTGACTCATACATCACAACCCTTAACGTTTTGCAAGCCTACACATTGAAGCAAATCCGTGATCCTGATTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGATTACATGGAATCAACTAAGGCAGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCTCCTGGTCTTGAAGACACTCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAATACCGGTTAA	2901	0.4557	MAARNIEKMTSIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHKPEKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKKLVAQLKKTPQEIFDAVKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFELSMWRCTDELRFRAHELHRSSKRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERSRQLLANGTSDIPEETTFTNVEQFLEPLELCYGSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYREWSEEKRQEWLLSELSGKRPLFGHDLPKTEEINDVLETFHVISELPSDNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSVDWYRERINGKQEVMIGYSDSGKDAGRFSAAWALYKAQEELVKVAKDYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMEEMAVIATKEYRSVVFKEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGEAFKHVIEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIASLFDKLLVSEELRPFGENLRAKYEETKSFLLKVAGHKDILEGDPYLKQRLCLRDSYITTLNVLQAYTLKQIRDPDYHVKLRPHLSKDYMESTKAAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG	966

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed1g0755	966	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	966	-	-
	Aed1g0755	966	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	592	604	IPR033129	-
	Aed1g0755	966	Pfam	Phosphoenolpyruvate carboxylase	36	966	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	Hamap	Phosphoenolpyruvate carboxylase [ppc].	23	966	IPR022805	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	Gene3D	Phosphoenolpyruvate/pyruvate domain	309	444	-	-
	Aed1g0755	966	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	966	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	966	IPR015813	GO:0003824
	Aed1g0755	966	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	169	180	IPR018129	-
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	168	181	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	281	296	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	221	237	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	441	461	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	590	610	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	764	790	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Aed1g0755	966	PRINTS	Phosphoenolpyruvate carboxylase signature	632	661	IPR021135	GO:0006099\|GO:0008964\|GO:0015977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed1g0755	Aed-Chr1	8574827	8580904	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed1g0755	1	8574827	8580904	Aed1g0755	1	8574827	8580904	ECH
	Aed1g0755	1	8574827	8580904	Aed5g0942	5	7286450	7294280	PCT
	Aed5g1264	5	11714511	11722559	Aed1g0755	1	8574827	8580904	PCT