Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0541 ATGTCACATTCGTCGGGGAAGCCGCTTACCGAGGTGGTCGACGCCGCCGCCGCCACCTTCTCCGATCGCTTCCGCGACGCCCTCACCTGCGACAACAACAACAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCCCCGGTCTCGCCATTGCGGACCACGCGCGGCCCCGCCGCGAGTAGCAGCTCCAGCTCCTCTGGCTCCTTCTCGGGCCGAACTGGGCCTAGCTCCGTTACCCGAAAGCCCGAATCGGCCCAAAACAATAGCAACAACACTCATACTCACAGTAACAGCAGCAACAACAACAACAACTCCGGCGAGCTTTCTGGTTCGAGTGAGAACAGCCCCACAGCGCGTGGGTTTAAGCCGGGTCACGCGAGATCCGACTCCGGATCCGCGCCGGCGCCGTTGATATACTCCGGCCAAACTGCGACCTCGCCGGCGATGAATGTGCTCCCCTCCGGGAACATTTGTCCCTCCGGGAAGATCTCGAAGACGGGGATGGCGGCGAATCGGAGTAGCAGAAGTAGTAGAAGCGATGTTTTGGGGACCGGGATGGGGAACTATGGCCACGGGAGCATAATGCGCGGCGGAGGGAAGGCAGAGCCGGCGAGTTCTCGCGGCGGAAGTGAGGCGGTGAAGAGAACGGGGCACGTGATGCAGAGTGTGGATCCGGAAGAGTTGAAGAGGTTGGGGAATGAGTGTTACAAAAAGGGGCATTTTTCTGATGCGTTGAGTCTCTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGCCGCTTACCGGAGCAATCGCGCAGCGGCGCTGACGGGGCTCGGTCGGTTGGGTGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTCGGACAAGTTGAGAATGCTAGGAAGCACCTTGGGATGCAGCCAGATCCGTCTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTACGGAGGGTTGGGGATTGGAAGACTGTTCTCAGGGAAGTTGATGCTGCTGTTACTGCTGGAGCGGATTCTTCGCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAATCAGTTTTGTTGCATATTCCCAAATCGGAGCTGCACACTAATTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAGGCTTATTCCTATTTTGTCAGATCTCAGATTGAGTTAGCATTGGGAAGGTTTGAGAATGCGGTTACAGCTTCTGAGAAAGCCAGTCAGATTGATTCCAGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGTGGCAATGATCTTTTTAAATCTGAAAGGTACACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGACTGGATCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGGTCAATTGAAGACTCCAATCAAGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCAGCATCAAACAGCAAGCTAGAAAGGTGGGAGGAAGCAGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCACGCACAAGTTGCCCTAAAGAAGTCACGTGGGGAAGAAGTATATAATTTAAAATTCGGCGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCAACTAACTCGCAATGCAAACAAATGTCACCATTTGTCAATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAACAAAGCCCAACAGTTGCAACTGCAGAGAATGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGGGTGAAGGAAATCGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2091 0.5098 MSHSSGKPLTEVVDAAAATFSDRFRDALTCDNNNNINKPDFRELDLGSPVSPLRTTRGPAASSSSSSSGSFSGRTGPSSVTRKPESAQNNSNNTHTHSNSSNNNNNSGELSGSSENSPTARGFKPGHARSDSGSAPAPLIYSGQTATSPAMNVLPSGNICPSGKISKTGMAANRSSRSSRSDVLGTGMGNYGHGSIMRGGGKAEPASSRGGSEAVKRTGHVMQSVDPEELKRLGNECYKKGHFSDALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFLRFGQVENARKHLGMQPDPSEMQRLQVVEKHISKCGDVRRVGDWKTVLREVDAAVTAGADSSPQLFMCRAEAFLKLHQIDDAESVLLHIPKSELHTNSSSQARFFGMLSEAYSYFVRSQIELALGRFENAVTASEKASQIDSRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVATNSQCKQMSPFVNTLCGRYPSINFLKVDIQQSPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0541 696 Gene3D Glutaredoxin 589 695 - -
Aed1g0541 696 SUPERFAMILY TPR-like 227 451 IPR011990 GO:0005515
Aed1g0541 696 Pfam Tetratricopeptide repeat 233 293 - -
Aed1g0541 696 SUPERFAMILY Thioredoxin-like 499 694 IPR036249 -
Aed1g0541 696 Pfam Thioredoxin 601 687 IPR013766 -
Aed1g0541 696 CDD TRX_family 601 688 - -
Aed1g0541 696 Pfam Tetratricopeptide repeat 417 447 IPR019734 GO:0005515
Aed1g0541 696 MobiDBLite consensus disorder prediction 55 120 - -
Aed1g0541 696 MobiDBLite consensus disorder prediction 28 143 - -
Aed1g0541 696 ProSiteProfiles TPR repeat profile. 496 529 IPR019734 GO:0005515
Aed1g0541 696 MobiDBLite consensus disorder prediction 165 185 - -
Aed1g0541 696 MobiDBLite consensus disorder prediction 165 227 - -
Aed1g0541 696 ProSiteProfiles TPR repeat profile. 227 260 IPR019734 GO:0005515
Aed1g0541 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 17 694 IPR044534 -
Aed1g0541 696 SMART tpr_5 227 260 IPR019734 GO:0005515
Aed1g0541 696 SMART tpr_5 496 529 IPR019734 GO:0005515
Aed1g0541 696 SMART tpr_5 462 495 IPR019734 GO:0005515
Aed1g0541 696 SMART tpr_5 416 449 IPR019734 GO:0005515
Aed1g0541 696 SMART tpr_5 261 294 IPR019734 GO:0005515
Aed1g0541 696 SMART tpr_5 530 563 IPR019734 GO:0005515
Aed1g0541 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 17 694 - -
Aed1g0541 696 Gene3D Tetratricopeptide repeat domain 225 582 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0541 Aed-Chr1 6961907 6966471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0541 461 606 U-box Gene Family AT3G07370 27.869 2.19e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0541 1 6961907 6966471 Aed1g0541 1 6961907 6966471 ECH
Aed1g0541 1 6961907 6966471 Aed5g1262 5 11674166 11678174 PCT