Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0540 ATGGCCAACAGTAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCGCCTGGAATTAGTGCATCCCCTTCAGAAGACAATATGCGGTATTTCAATGTGATGATCCTTGGCCCAACTCAGTCGCCTTATGAAGGGGGAGTTTTCAAGTTAGAATTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGCTTGGCAGGATATGTCTTGACATTCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATTCGCACTGTACTTTTGAGTATTCAAGCTCTTCTAAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAAAGTAATGAGGTCGAGGCTGTCGAAACAGCGAAGGAATGGACCCGGTTATATGCTAGTGGCGCATGA 420 0.4595 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0540 139 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 136 - -
Aed1g0540 139 SUPERFAMILY UBC-like 7 137 IPR016135 -
Aed1g0540 139 Gene3D Ubiquitin Conjugating Enzyme 1 71 IPR016135 -
Aed1g0540 139 CDD UBCc 7 132 IPR000608 -
Aed1g0540 139 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 137 IPR000608 -
Aed1g0540 139 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Aed1g0540 139 Gene3D Ubiquitin Conjugating Enzyme 72 137 IPR016135 -
Aed1g0540 139 PANTHER BNAA07G38410D PROTEIN 2 136 - -
Aed1g0540 139 SMART ubc_7 8 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0540 Aed-Chr1 6956722 6960307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0540 8 104 Miscellaneous Gene Families AT3G17000 28.319 2.55e-10 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0540 1 6956722 6960307 Aed1g0540 1 6956722 6960307 ECH
Aed1g0540 1 6956722 6960307 Aed5g1263 5 11696417 11702555 PCT