Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02048 ATGGAAACCGAGCGACATTTAGTTCATGTCGCTATTCCAGGAGCTAGAGGGGAATACGTTCGATGGAATAATTTTTTAGGTGTATTGCCACATCCTCAAGGATTAGGTCCACTTTTTACAGGCCAGTGGAATCTTTATGCTCAAAACCCAGATTCCAGTAGTCATTTATTTGGTACCCCTCAGGGAGCAGGAACTGCCATTCTAACACTTCTTGGGGGATTCCATCCACAAACGCAAAGCTTATGGCTGACTGATATTGCGGACCATCATTTAGCTATTTCGATTCTTTTCCTGATAGCTGGTCACATGTATAGAACCAACTTCGGGATTGGCCACAGTATAAAAGAGATCTTAGAAGCACACATTCCTCCAGGGGGTAGATTGGGGCGTGGACATAAGGGTCTTTATGACACAATCAATAATTCACTTCATTTTCAATTAGGTCTTGCTCTAGCCTCTTTAGGAGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTTATAGCGCAAGATTTTACTACTCAAGCGGCGTTATATACTCATCATCAATACATCGCAGGATTCATTATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTTATTAGAGATTACAATCCAGAACAAAACGAGGATAATGTATTGGCAAGAATGTTAGACCACAAAGAAGCTATAATATCGCATTTAACTTGGGCCAGCCTATTTCTGGGGTTCCATACTTTGGGATTTTATGTCCATAATGATGTCATGCTTGCTTTTGGCACTCCGGAAAAACAAATCTTGATCGAACCCATATTTGCCCAATGGATACAATCTGCGCATGGTAAAACTTCATACGGCTTCGATGTACTGTTATCTTCAACGAATAGTCCGGCGTTCAATGCGGGGCGAAGCATATGGTTGCCCGGTTGGTTAAATGCTATAAATGAGAGTAGTAATTCTCTATTCTTAACAATAGGACCCGGAGATTTCTTAGTTCATCATGCTATTGCTCTAGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTGGATGCACGTGGTTCCAAGTTAATGCCAGATAAAAAAGATTTTGGTTATAGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACGATTGGCTGGGAATTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTGATTCGCTGGAGAGATAAACCAGTGGCTCTTTCCATTGTGCAAGCGAGATTGGTTGGATTAGCCCACTTTTCTAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCCGTCTCCGCAACAAAAAACAAGAAACCGATGGCTCCAAGGGACAGAGCGACCGCACTTAACGGACCCAATCTCACCGCACACAACGCCAAAGAGATCCGTTACAGAGGCGTTAGGAAACGCCCATGGGGACGTTACGCTGCCGAGATCCGCGACCCTGGCAAGAAGACGCGCGTCTGGCTTGGAACTTTTGATACAGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCAAGGGAGTTCCGTGGCGCCAAGGCTAAGACCAATTTTCCGACTCCGGCGGAGCTTCTTAACAACAGCAACAGCTTCGTTAACATTAACAACAGCAACGCCGCGCGTAGCCCTAGCCAGAGTAGCACGCTCGATTCGTCTTCCCCGCCGCCGCCGCCACCGTCGGCGCAGCCGCAGTCGCAGCCGCAGCTAGAACTCACGCTGAAGCCGTTTTCGTCCGCCTCCGCTTCCGCCGTCATGGCGTTCCCGGCGTCGCGTCCTGTTATGTTCTTTGACGCGTTCGCGCGTGCGGCGGAGAACGTGAGCCGCCGCGAGATGTGTTTCATAGGTGGCGCGTGCAGCGACTCCGACTCTTCCTCCGTGGTGGACTACGAGGGCGTGCCACGTAAGGGACTGTTGGATCTCGACCTCAACATCGCTCCTCCTCCTGAGGTCGCTTGA 2055 0.4798 METERHLVHVAIPGARGEYVRWNNFLGVLPHPQGLGPLFTGQWNLYAQNPDSSSHLFGTPQGAGTAILTLLGGFHPQTQSLWLTDIADHHLAISILFLIAGHMYRTNFGIGHSIKEILEAHIPPGGRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLTWASLFLGFHTLGFYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTNSPAFNAGRSIWLPGWLNAINESSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSSSLVARKAHNLEVTGSNPVSATKNKKPMAPRDRATALNGPNLTAHNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPAELLNNSNSFVNINNSNAARSPSQSSTLDSSSPPPPPPSAQPQSQPQLELTLKPFSSASASAVMAFPASRPVMFFDAFARAAENVSRREMCFIGGACSDSDSSSVVDYEGVPRKGLLDLDLNIAPPPEVA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02048 684 PANTHER OUTER MEMBRANE PROTEIN, OMPA-RELATED 6 406 - -
Adu08g02048 684 SUPERFAMILY DNA-binding domain 495 553 IPR016177 GO:0003677
Adu08g02048 684 MobiDBLite consensus disorder prediction 459 483 - -
Adu08g02048 684 SUPERFAMILY Photosystem I subunits PsaA/PsaB 6 448 IPR036408 -
Adu08g02048 684 Pfam AP2 domain 495 544 IPR001471 GO:0003700|GO:0006355
Adu08g02048 684 Pfam Photosystem I psaA/psaB protein 403 445 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 Pfam Photosystem I psaA/psaB protein 29 402 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 ProSiteProfiles AP2/ERF domain profile. 495 552 IPR001471 GO:0003700|GO:0006355
Adu08g02048 684 PANTHER PHOTOSYSTEM I CHLOROPHYLL A APOPROTEIN A2 6 406 - -
Adu08g02048 684 MobiDBLite consensus disorder prediction 567 582 - -
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 230 252 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 388 409 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 182 208 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 330 348 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 361 381 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 86 104 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 PRINTS Plant photosystem I psaA and psaB protein signature 143 166 IPR001280 GO:0009579|GO:0015979|GO:0016021
Adu08g02048 684 ProSitePatterns Photosystem I psaA and psaB proteins signature. 372 381 IPR020586 -
Adu08g02048 684 Gene3D AP2/ERF domain 494 553 IPR036955 GO:0003700|GO:0006355
Adu08g02048 684 PRINTS Ethylene responsive element binding protein signature 496 507 IPR001471 GO:0003700|GO:0006355
Adu08g02048 684 PRINTS Ethylene responsive element binding protein signature 518 534 IPR001471 GO:0003700|GO:0006355
Adu08g02048 684 MobiDBLite consensus disorder prediction 567 601 - -
Adu08g02048 684 Gene3D Photosystem I PsaA/PsaB 403 453 IPR036408 -
Adu08g02048 684 SMART rav1_2 495 558 IPR001471 GO:0003700|GO:0006355
Adu08g02048 684 MobiDBLite consensus disorder prediction 583 597 - -
Adu08g02048 684 Gene3D Photosystem I PsaA/PsaB 3 402 IPR036408 -
Adu08g02048 684 CDD AP2 495 552 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02048 Adu-Chr8 34272758 34277569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02048 485 630 AP2-EREBP Transcription Factor Family AT3G15210 64.189 1.40e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu08g02048 PsaA_PsaB 6.2e-181 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02048 08 34272758 34277569 Adu10g00245 10 2997784 2999375 ECH
Adu08g02048 08 34272758 34277569 Adu08g02048 08 34272758 34277569 ECH