Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g02421 ATGGATAAGATGATAGCTTCAGAGATGGACCAACATAGACAAGTTTATTTTCATTCAGAACCCGGTATCCTTCCAAGAGGCACTGGCATCTCGCATCCTAATATCCATACGATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATTCCCACTATTTACCACCAGATGCTTATGACAATGGCGTATATGTGACACAGTATAACGGGGTTCAACCGCAACATAATCGTAACATGGGCGTTGCAGCTACGCCGAATTTATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTATGCCTCTAAATCATAGAGGCTCTGATCAATTGCCTGGTTCGGGCCCGTATGCAGTGTCTTTAGTTTCTTCGGATAATTTTGGAAGAAGCAGCAGTTTCATGGATGATGTCAGAGGTCCATACAAGAGGAAAAGTGCTGAAGGCATGAGAGGAAATTATCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCTAGGCATGCCGACGGGGTTCCGGTGATGGATACTGCGTCTTTTCCTCTGCGTGTCCCTTCGTTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCACGATCATAACCATTTGATTCGAGGAAACTATGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAACGATGGTCATACAACAGCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACAGCGAGCAACAGAAACGGCCTTAGATTTCCTCATCCTCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCACGGTGTTAACTTCCACCCTCCTGTAACTGCGGCTTCATTCAGAGTTCCAACAAATCCCTCACACGGTGCTGCAATGCCCACGCCTAATGGTTTCGAGATGGGCCCTAGGCATGTGGGCCCTGTGCCATCAGGAGGCCTACGCATCTACCGACCTCATAGGGGAGTCATGCATGATACTATTGGTCACCGAAATATCCCCCCCATGGGTTTCCTTCATGTTGATGATGTCGCTTTAATCGACGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCATGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAACGTAAGCACTGGTTTATCAGAGGAAACAATTGCGGCCCAATTGAAAACAAAATCATATTTCAAACCGATTTCTGCTACTAATTCAGATGAGGCAGCCTTGGACGACCGCGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTGCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4682 MDKMIASEMDQHRQVYFHSEPGILPRGTGISHPNIHTIVAASGSTSNHDSHYLPPDAYDNGVYVTQYNGVQPQHNRNMGVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGPYAVSLVSSDNFGRSSSFMDDVRGPYKRKSAEGMRGNYQYFNAPASSSTAPPNARHADGVPVMDTASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNNDGHTTAWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSHGAAMPTPNGFEMGPRHVGPVPSGGLRIYRPHRGVMHDTIGHRNIPPMGFLHVDDVALIDEVGNLVDHHRDMRMDIEDMSYEDLLALGERIGNVSTGLSEETIAAQLKTKSYFKPISATNSDEAALDDREADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g02421 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 520 IPR045191 GO:0061630
Adu07g02421 523 Pfam Ring finger domain 469 512 IPR001841 -
Adu07g02421 523 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 520 - -
Adu07g02421 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Adu07g02421 523 SMART ring_2 471 511 IPR001841 -
Adu07g02421 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 516 IPR013083 -
Adu07g02421 523 SUPERFAMILY RING/U-box 465 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g02421 Adu-Chr7 78520562 78524214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g02421 388 516 C3H Transcription Factor Family AT2G15530 44.444 1.04e-34 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g02421 07 78520562 78524214 Adu07g02421 07 78520562 78524214 ECH
Adu07g02421 07 78520562 78524214 Adu03g01815 03 31238049 31238951 PCT