Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04498 ATGGATAATAATGGTTGCTTGCCATGTACACGTCGTGAAGGTTTTCCGGCTGGACTGAGAGTTCTGGTTGTTGATGATGATCCAACATGGCTCAAGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTACCAAGTGACTACTTGTTGTTTGGCAACCGAGGCTCTGAAGAAGCTTCGAGAGAGGAAAGATGCATTCGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGATTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTGCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGGAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCACTTGATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTGCATTAGAAGATTGTATCAGTTCAACAAGGAAAAGGAAAGATACAGATAACAAACACGACGAAAGAGAATTCGGAGATTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCCAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTACCAGAGAAAATGTTGCTAGTCATTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAAGCAGAGAGATCAGAAGAAATGCTCTTCAAGTGGAATAAAGAATCCGGATTTGAATCCGAAAGATCCCGGAAGCTCTAGTATTAAGAACTCTATGAACAAGCAACAAAATGTAGTTTCAATTGACGGCTTCAGATGTCCAAATAATGGATTAGTGCAACTTCATGAATCCGATTTCACTGTGTCAGAGCTTAATAAAACAGAACAAAGAAGAGCACTGGCTACTAATAACATTATTCCTGATCCAAACATGACAAAGGTTTCACAGATAGTCCTTAATCAAACCTTTTCACCTCTCAATTCAGAAGGAAACATTGAAGTATTTGATTGCACCATACCAACACAGTACACTTGGAATCAAGTTCCCAAAAGGAAACTCCAAGATGATCCTAAATCACAATCAATTGCTTCAATGGTGTCCAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGACAACATTATTCCGGTTCAGTCCAAAAGCCTTATGGTGAATGATCAATCCTCAGTCACTTCAAATCCGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCATTCCTGATCTGGAATTTTACCAGCAAAACCTACTCTGGGGTGGCGAGGCGGCTTTTTCGCCTTTGGAGGAGGACTTGAATTTCTTCTTGCTACAAAGTGAATGCTACAATGACATGAACTTTGGTATGCACAGCATAGACATGTCAGACTATTATTACGATCCAGGGCTTATTGCTGATGTTCCAAACCATTTATTATACGATTCAGCAGATTATTCAGTAGTAGATCAAAGTCTATTCATAGCATGA 1605 0.4044 MDNNGCLPCTRREGFPAGLRVLVVDDDPTWLKILEKMLKKCSYQVTTCCLATEALKKLRERKDAFDIVISDVNMPDMNGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHLMRNGQDQCCDDVSLFALEDCISSTRKRKDTDNKHDEREFGDSSSTKKARVVWSVDLHQKFVQAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQRDQKKCSSSGIKNPDLNPKDPGSSSIKNSMNKQQNVVSIDGFRCPNNGLVQLHESDFTVSELNKTEQRRALATNNIIPDPNMTKVSQIVLNQTFSPLNSEGNIEVFDCTIPTQYTWNQVPKRKLQDDPKSQSIASMVSSPSAASSIASSAVDNIIPVQSKSLMVNDQSSVTSNPGLKTQEFDASLIPDLEFYQQNLLWGGEAAFSPLEEDLNFFLLQSECYNDMNFGMHSIDMSDYYYDPGLIADVPNHLLYDSADYSVVDQSLFIA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04498 534 PIRSF RR_ARR_type-B 2 492 IPR017053 GO:0003677|GO:0003700|GO:0009736
Adu03g04498 534 SMART REC_2 19 131 IPR001789 GO:0000160
Adu03g04498 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 IPR045279 GO:0009736
Adu03g04498 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 IPR045279 GO:0009736
Adu03g04498 534 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Adu03g04498 534 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Adu03g04498 534 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Adu03g04498 534 Gene3D - 202 270 - -
Adu03g04498 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 - -
Adu03g04498 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 - -
Adu03g04498 534 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Adu03g04498 534 SUPERFAMILY CheY-like 18 143 IPR011006 -
Adu03g04498 534 Gene3D - 19 166 - -
Adu03g04498 534 CDD REC_typeB_ARR-like 21 135 - -
Adu03g04498 534 MobiDBLite consensus disorder prediction 276 297 - -
Adu03g04498 534 MobiDBLite consensus disorder prediction 270 297 - -
Adu03g04498 534 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04498 Adu-Chr3 134324981 134327256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04498 15 271 Response Regulator Gene Family AT2G25180 54.545 1.53e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Adu03g04498 Response_reg 1.6e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g04498 03 134324981 134327256 Adu03g04498 03 134324981 134327256 ECH
Adu10g00742 10 9427799 9435185 Adu03g04498 03 134324981 134327256 PCT