Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g03987 ATGAAGAGCACAACCNNNNNNNNNNNNNNGAAAGAGGATGATGCAGTTGTTGCAATTGGAGAAGACGAGAGTGAGCTTCCTTTGAAGCCAGGGATCTTCTTCTACCCAGCAACACCAACCTCCTTTGTTGTTTGTGATGCGCTTGAACCTGATTTCCCCATCATCTATGTCAACAAGGTCTTTGAAATCTTCACCGGTTATCGTGCTGACGAGGCTCTCGGTCGAAACTGTCGGTTCTTGCAGTTCAGAGATCCTCGAGCTCAGAGGCGGCACCCTCTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGCCTTGAGGAAGGCATTGAGTTCCAAGGTGAACTTCTGAATTTCCGAAAGGATGGTACTCCTTTGGTGAATAGACTCAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACACGTAATAGGTATCCAACTATTTTCTGAGGCAAATATAGATCTGAACCGCGTCTCATACCCAGTCTTCAAAAAGACTTGCAATCAAGATTTCGATAAGACTGGTAAATTCCCTCCTAAGAGTGGACAAACATTGTACAGTCAGCACCAAGAGCTGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTAGCTCACAACATTTTGTCACGTTTGACACCAAGGGACGTTGCATCCATCGGGTCTGTATGCAGGAGGATCCGCCAACTGACAAAGAATGAGCATGTCAGGAAGATGGTGTGTCAAAATGTGTGGGGAAAAGAAGTCACTGGTACCTTGGAATTGATGACCAAGAAGTTAGGATGGGGTCGTCTAACACGGGAACTTACTACTCTCGAGGCAGTTTGTTGGAGAAAACTGACAGTTGGAGGAGCAGTGGAACCTTCACGCTGCAATTTCAGCGCTTGCGCCGCAGGGAATCGTCTTGTACTGTTTGGAGGTGAAGGAGTAGATATGCAACCTATGGATGACACTTTTGTGCTAAATCTTGATGCTAAAAATCCAGAGTGGCGCAGGGTTAGCGTGAAATCATCCCCACCAGGAAGATGGGGCCACACACTCTCTTGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTCCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTCTGCGGTGGAACCCCACCACTTCCAAGATCTTGGCACAGTTCTTGCACAATCGAAGGGTCAAAATTGGTTGTCTCTGGTGGGTGCACAGACGCTGGGGTTCTTCTTAGTGACACGTATCTATTGGACCTTACAACAGGTAATCCAACATGGAGAGAGATTCCAACATCATGGGCGCCACCTCCTCGTTTGGGGCACTCACTGTCAGTCTATGGGAGGACAAAGATTCTTATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGCTTAAGATCAGGGGAGGCTTACACCATTGATCTAGAAGATGAACAACCACACTGGAGACCACTAGAATACAGTGCCTTCACTGGAGTAGCTAGTCAAAGTGCTGTGGTTCCTCCTCCTCGGCTAGATCATGTTGCTGTCAGCATGCCTTGCGGAAGAATAATTGTTTTTGGAGGTTCCATTGCAGGTCTTCACTCACCGTCTCAACTCTTTCTGTTGGATCCGGCTGAGGAGAAGCCTTCATGGAGGATCCTCAATGTTCCGGGGCAACCACCTAAATTTGCTTGGGGTCACAGCACTTGTGTGGTCGGAGGAACAAGGGTTTTGGTGCTGGGCGGACATACTGGAGAGGAGTGGATACTGAACGAGTTGCATGAATTATGCTTGGCAAGTCGACAGGATTCTGACCTGTGA 1836 0.4739 MKSTTXXXXXKEDDAVVAIGEDESELPLKPGIFFYPATPTSFVVCDALEPDFPIIYVNKVFEIFTGYRADEALGRNCRFLQFRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKKTCNQDFDKTGKFPPKSGQTLYSQHQELCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNVWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTGNPTWREIPTSWAPPPRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPHWRPLEYSAFTGVASQSAVVPPPRLDHVAVSMPCGRIIVFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g03987 611 TIGRFAM sensory_box: PAS domain S-box protein 53 148 IPR000014 -
Adu03g03987 611 Pfam PAS domain 43 148 IPR000014 -
Adu03g03987 611 SUPERFAMILY Galactose oxidase, central domain 279 596 IPR011043 -
Adu03g03987 611 Pfam Galactose oxidase, central domain 406 457 - -
Adu03g03987 611 Pfam Galactose oxidase, central domain 357 404 - -
Adu03g03987 611 Pfam F-box domain 198 235 IPR001810 GO:0005515
Adu03g03987 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 43 149 IPR035965 -
Adu03g03987 611 ProSiteProfiles PAS repeat profile. 54 85 IPR000014 -
Adu03g03987 611 Gene3D - 271 472 IPR015915 GO:0005515
Adu03g03987 611 Gene3D - 473 605 IPR015915 GO:0005515
Adu03g03987 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 21 608 - -
Adu03g03987 611 CDD PAS 38 148 IPR000014 -
Adu03g03987 611 Pfam Galactose oxidase, central domain 292 342 - -
Adu03g03987 611 SUPERFAMILY F-box domain 191 250 IPR036047 GO:0005515
Adu03g03987 611 SMART pac_2 113 154 IPR001610 -
Adu03g03987 611 Pfam Kelch motif 516 563 IPR011498 GO:0005515
Adu03g03987 611 Gene3D - 192 242 - -
Adu03g03987 611 Gene3D PAS domain 35 160 - -
Adu03g03987 611 PANTHER ADAGIO PROTEIN 3 21 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g03987 Adu-Chr3 129030752 129033903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g03987 41 162 AGC Kinase Gene Family AT5G58140 34.677 1.08e-14 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03987 03 129030752 129033903 Adu03g03987 03 129030752 129033903 ECH